Advanced Search

Show simple item record

dc.contributor.authorSingh, Sumeet Pal
dc.contributor.authorJanjuha, Sharan
dc.contributor.authorChaudhuri, Samata
dc.contributor.authorReinhardt, Susanne
dc.contributor.authorKraenkel, Annekathrin
dc.contributor.authorDietz, Sevina
dc.contributor.authorEugster, Anne
dc.contributor.authorBilgin, Halil
dc.contributor.authorKorkmaz, Selcuk
dc.contributor.authorZararsiz, Gokmen
dc.contributor.authorNinov, Nikolay
dc.contributor.authorReid, John E.
dc.date.accessioned2019-06-26T08:08:01Z
dc.date.available2019-06-26T08:08:01Z
dc.date.issued2018en_US
dc.identifier.citationSingh, S. P., Janjuha, S., Chaudhuri, S., Reinhardt, S., Kränkel, A., Dietz, S., ... & Ninov, N. (2018). Machine learning based classification of cells into chronological stages using single-cell transcriptomics. Scientific reports, 8(1), 17156.en_US
dc.identifier.urihttps://dx.doi.org/10.1038/s41598-018-35218-5
dc.identifier.urihttp://dspace.trakya.edu.tr/xmlui/handle/trakya/4243
dc.descriptionKorkmaz, Selcuk (Trakya author)en_US
dc.description.abstractAge-associated deterioration of cellular physiology leads to pathological conditions. The ability to detect premature aging could provide a window for preventive therapies against age-related diseases. However, the techniques for determining cellular age are limited, as they rely on a limited set of histological markers and lack predictive power. Here, we implement GERAS (GEnetic Reference for Age of Single-cell), a machine learning based framework capable of assigning individual cells to chronological stages based on their transcriptomes. GERAS displays greater than 90% accuracy in classifying the chronological stage of zebrafish and human pancreatic cells. The framework demonstrates robustness against biological and technical noise, as evaluated by its performance on independent samplings of single-cells. Additionally, GERAS determines the impact of differences in calorie intake and BMI on the aging of zebrafish and human pancreatic cells, respectively. We further harness the classification ability of GERAS to identify molecular factors that are potentially associated with the aging of beta-cells. We show that one of these factors, junba, is necessary to maintain the proliferative state of juvenile beta-cells. Our results showcase the applicability of a machine learning framework to classify the chronological stage of heterogeneous cell populations, while enabling detection of candidate genes associated with aging.en_US
dc.language.isoengen_US
dc.publisherNature Publishing Groupen_US
dc.identifier.doi10.1038/s41598-018-35218-5en_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectPancreatic-Isletsen_US
dc.subjectDynamicsen_US
dc.subjectSignaturesen_US
dc.subjectCycleen_US
dc.titleMachine learning based classification of cells into chronological stages using single-cell transcriptomicsen_US
dc.typearticleen_US
dc.authoridhttp://orcid.org/0000-0002-5154-3318en_US
dc.departmentFakülteler, Tıp Fakültesi, Temel Tıp Bilimleri Bölümü, Biyoistatistik ve Tıbbi Bilişim Anabilim Dalıen_US
dc.identifier.volume8en_US
dc.identifier.issue1en_US
dc.identifier.startpage17156en_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.relation.journalScientific Reportsen_US


Files in this item

FilesSizeFormatView

There are no files associated with this item.

This item appears in the following Collection(s)

Show simple item record